pom.xml

<project
    xmlns="http://maven.apache.org/POM/4.0.0"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <groupId>net.catdata</groupId>
    <artifactId>fql</artifactId>
    <version>0.9-SNAPSHOT-maven</version>
    <packaging>jar</packaging>
    <name>Categorical Data IDE</name>
    <url>http://categoricaldata.net/fql.html</url>
    <prerequisites>
        <maven>3.3.9</maven>
    </prerequisites>
    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <maven.compiler.source>1.8</maven.compiler.source>
        <maven.compiler.target>1.8</maven.compiler.target>
    </properties>
    <repositories>
        <repository>
          <id>release</id>
          <url>https://nexus.isis.vanderbilt.edu/repository/maven-releases</url>
        </repository>
        <repository>
          <id>snapshot</id>
          <url>https://nexus.isis.vanderbilt.edu/repository/maven-snapshots</url>
        </repository>
    </repositories>
    <build>
        <!-- Use non-standard src directory -->
        <sourceDirectory>src</sourceDirectory>
        <resources>
            <resource>
                <directory>resources</directory>
            </resource>
        </resources>
        <testSourceDirectory>test/src</testSourceDirectory>
        <testResources>
            <testResource>
                <directory>${basedir}/test/resources</directory>
            </testResource>
        </testResources>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-enforcer-plugin</artifactId>
                <version>3.0.0-M1</version>
                <executions>
                    <execution>
                        <id>enforce-maven</id>
                        <goals>
                            <goal>enforce</goal>
                        </goals>
                        <configuration>
                            <rules>
                                <requireMavenVersion>
                                    <version>[3.0,)</version>
                                </requireMavenVersion>
                            </rules>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <!-- 
            <plugin>
               <groupId>org.codehaus.mojo</groupId>
               <artifactId>build-helper-maven-plugin</artifactId>
               <version>3.0.0</version>
               <executions>
                 <execution>
                   <id>add-antlr4-source</id>
                   <phase>generate-sources</phase>
                   <goals>
                     <goal>add-source</goal>
                   </goals>
                   <configuration>
                     <sources>
                       <source>${basedir}/gen_src</source>
                     </sources>
                   </configuration>
                </execution>
              </executions>
            </plugin>
            -->
            <plugin>
               <groupId>org.codehaus.mojo</groupId>
               <artifactId>build-helper-maven-plugin</artifactId>
               <version>3.0.0</version>
               <executions>
                 <execution>
                   <id>add-antlr4-source</id>
                   <phase>generate-sources</phase>
                   <goals>
                     <goal>add-source</goal>
                   </goals>
                   <configuration>
                     <sources>
                       <source>${basedir}/gen_src</source>
                     </sources>
                   </configuration>
                </execution>
              </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-eclipse-plugin</artifactId>
                <version>2.10</version>
                <configuration>
                    <downloadSources>true</downloadSources>
                    <downloadJavadocs>false</downloadJavadocs>
                </configuration>
            </plugin>
            <!-- Set a compiler level -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.7.0</version>
                <configuration>
                    <source>${maven.compiler.source}</source>
                    <target>${maven.compiler.target}</target>
                </configuration>
            </plugin>
            <!-- Generate the jar manifest -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>3.1.0</version>
                <configuration>
                    <archive>
                        <manifest>
                            <mainClass>catdata.ide.IDE</mainClass>
                        </manifest>
                    </archive>
                </configuration>
            </plugin>
            <!-- Build a standalone FQL jar containing all libraries when 'package' is executed. -->
            <plugin>
                <artifactId>maven-assembly-plugin</artifactId>
                <version>3.1.0</version>
                <configuration>
                    <archive>
                        <manifest>
                            <mainClass>catdata.ide.IDE</mainClass>
                            <!-- your further configuration here -->
                        </manifest>
                    </archive>
                    <descriptors>
                      <descriptor>src/main/java/assembly/bin.xml</descriptor>
                      <descriptor>src/main/java/assembly/jar-with-deps.xml</descriptor>
                    </descriptors>
                </configuration>
                <executions>
                    <execution>
                        <id>make-assembly</id>
                        <phase>package</phase>
                        <goals>
                            <goal>single</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <!--
            <plugin>
              <groupId>org.apache.maven.plugins</groupId>
              <artifactId>maven-dependency-plugin</artifactId>
              <version>3.0.2</version>
              <executions>
                <execution>
                  <id>copy-dependencies</id>
                  <phase>package</phase>
                  <goals>
                    <goal>copy-dependencies</goal>
                  </goals>
                  <configuration>
                    <outputDirectory>${project.build.directory}/lib</outputDirectory>
                    <overWriteReleases>false</overWriteReleases>
                    <overWriteSnapshots>false</overWriteSnapshots>
                    <overWriteIfNewer>true</overWriteIfNewer>
                  </configuration>
                </execution>
              </executions>
            </plugin>
            -->
            <plugin>
                <groupId>org.antlr</groupId>
                <artifactId>antlr4-maven-plugin</artifactId>
                <version>4.7.1</version>
                <executions>
                    <execution>
                        <id>antlr</id>
                        <goals>
                            <goal>antlr4</goal>
                        </goals>
                        <configuration>
                            <listener>true</listener>
                            <visitor>true</visitor>
                            <outputDirectory>${project.build.directory}/generated-sources/antlr4</outputDirectory>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>2.21.0</version>
                <configuration>
		          <skipTests>false</skipTests>
		        </configuration>
            </plugin>
        </plugins>
    </build>
    <distributionManagement>
      <repository>
        <id>release</id>
        <name>Release</name>
        <url>https://nexus.isis.vanderbilt.edu/repository/maven-releases</url>
      </repository>
      <snapshotRepository>
        <id>dsnapshot</id>
        <name>Snapshot</name>
        <url>https://nexus.isis.vanderbilt.edu/repository/maven-snapshots</url>
      </snapshotRepository>
    </distributionManagement>
    <dependencies>
        <!-- https://mvnrepository.com/artifact/commons-cli/commons-cli -->
        <dependency>
            <groupId>commons-cli</groupId>
            <artifactId>commons-cli</artifactId>
            <version>1.4</version>
        </dependency>
        <dependency>
            <groupId>net.sourceforge.collections</groupId>
            <artifactId>collections-generic</artifactId>
            <version>4.01</version>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-csv</artifactId>
            <version>1.5</version>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-exec</artifactId>
            <version>1.3</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.apache.commons/commons-lang3 -->
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-lang3</artifactId>
            <version>3.7</version>
        </dependency>
        <dependency>
            <groupId>com.h2database</groupId>
            <artifactId>h2</artifactId>
            <version>1.4.197</version>
        </dependency>
        <dependency>
            <groupId>org.glassfish</groupId>
            <artifactId>javax.json</artifactId>
            <version>1.1.2</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/jgraph/jgraph -->
        <dependency>
            <groupId>jgraph</groupId>
            <artifactId>jgraph</artifactId>
            <version>5.12.3.2</version>
        </dependency>
        <dependency>
            <groupId>org.jparsec</groupId>
            <artifactId>jparsec</artifactId>
            <version>3.0</version>
        </dependency>
        <dependency>
            <groupId>net.sf.jung</groupId>
            <artifactId>jung-algorithms</artifactId>
            <version>2.1.1</version>
        </dependency>
        <dependency>
            <groupId>net.sf.jung</groupId>
            <artifactId>jung-api</artifactId>
            <version>2.1.1</version>
        </dependency>
        <dependency>
            <groupId>net.sf.jung</groupId>
            <artifactId>jung-graph-impl</artifactId>
            <version>2.1.1</version>
        </dependency>
        <!--
        <dependency>
          <groupId>net.sf.jung</groupId>
          <artifactId>jung-io</artifactId>
          <version>2.1.1</version>
        </dependency>
        -->
        <dependency>
            <groupId>net.sf.jung</groupId>
            <artifactId>jung-visualization</artifactId>
            <version>2.1.1</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.antlr/antlr4 -->
        <dependency>
            <groupId>org.antlr</groupId>
            <artifactId>antlr4</artifactId>
            <version>4.7.1</version>
        </dependency>

        <!-- https://mvnrepository.com/artifact/com.opencsv/opencsv -->
        <dependency>
            <groupId>com.opencsv</groupId>
            <artifactId>opencsv</artifactId>
            <version>4.2</version>
        </dependency>
        <dependency>
          <!-- https://github.com/bobbylight/AutoComplete -->
            <groupId>com.fifesoft</groupId>
            <artifactId>autocomplete</artifactId>
            <version>2.6.1</version>
        </dependency>
        <dependency>
            <groupId>com.fifesoft</groupId>
            <artifactId>rstaui</artifactId>
            <version>2.6.1</version>
        </dependency>
        <dependency>
            <groupId>com.fifesoft</groupId>
            <artifactId>rsyntaxtextarea</artifactId>
            <version>2.6.1</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/com.github.rjeschke/txtmark -->
        <dependency>
            <groupId>es.nitaur.markdown</groupId>
            <artifactId>txtmark</artifactId>
            <version>0.16</version>
        </dependency>
        <!--
	<dependency>
            <groupId>org.codehaus.jtstand</groupId>
            <artifactId>jtstand-editor</artifactId>
            <version>1.5.13</version>
        </dependency>
    -->
        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>4.12</version>
            <scope>test</scope>
        </dependency>

    </dependencies>
</project>